HL_8PEG_110
3D structure
- PDB id
- 8PEG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli paused disome complex (queueing 70S non-rotated closed PRE state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CAGCUGGGAG
- Length
- 10 nucleotides
- Bulged bases
- 8PEG|1|Y|C|16, 8PEG|1|Y|U|17, 8PEG|1|Y|G|18, 8PEG|1|Y|G|19, 8PEG|1|Y|G|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PEG_110 not in the Motif Atlas
- Homologous match to HL_6JXM_001
- Geometric discrepancy: 0.1805
- The information below is about HL_6JXM_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
8PEG|1|Y|C|13
8PEG|1|Y|A|14
8PEG|1|Y|G|15
8PEG|1|Y|C|16
8PEG|1|Y|U|17
8PEG|1|Y|G|18
8PEG|1|Y|G|19
8PEG|1|Y|G|20
8PEG|1|Y|A|21
8PEG|1|Y|G|22
Current chains
- Chain Y
- tRNA-Val (A-site)
Nearby chains
- Chain 7
- Large subunit ribosomal RNA; LSU rRNA
- Chain W
- Transfer RNA; tRNA
Coloring options: