HL_8PFR_005

3D structure

PDB id

8PFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39L integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

8PFR|1|A|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PFR_005 not in the Motif Atlas

Homologous match to HL_5TBW_005

Geometric discrepancy: 0.0758

The information below is about HL_5TBW_005

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_58705.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8PFR|1|A|U|194
8PFR|1|A|U|195
8PFR|1|A|G|196
8PFR|1|A|G|197
8PFR|1|A|A|198
8PFR|1|A|A|199
8PFR|1|A|C|200
8PFR|1|A|A|201

Current chains

Chain A

25S rRNA

Nearby chains

Chain LH

60S ribosomal protein L4-A

Chain QY

60S ribosomal protein L26-A

Chain RE

60S ribosomal protein L32