HL_8PFR_056

3D structure

PDB id

8PFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39L integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

CAAAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PFR_056 not in the Motif Atlas

Homologous match to HL_5TBW_057

Geometric discrepancy: 0.0947

The information below is about HL_5TBW_057

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

8PFR|1|A|C|2693
8PFR|1|A|A|2694
8PFR|1|A|A|2695
8PFR|1|A|A|2696
8PFR|1|A|A|2697
8PFR|1|A|G|2698
8PFR|1|A|G|2699
8PFR|1|A|G|2700

Current chains

Chain A

25S rRNA

Nearby chains

Chain LN

60S ribosomal protein L10

Chain QT

60S ribosomal protein L21-A

Chain RQ

60S ribosomal protein L42-A