HL_8PFR_058

3D structure

PDB id

8PFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39L integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PFR_058 not in the Motif Atlas

Homologous match to HL_5TBW_059

Geometric discrepancy: 0.0691

The information below is about HL_5TBW_059

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8PFR|1|A|U|2744
8PFR|1|A|G|2745
8PFR|1|A|A|2746
8PFR|1|A|A|2747
8PFR|1|A|A|2748
8PFR|1|A|G|2749

Current chains

Chain A

25S rRNA

Nearby chains

Chain LI

60S ribosomal protein L5

Chain QT

60S ribosomal protein L21-A