HL_8PFR_062

3D structure

PDB id

8PFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39L integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PFR_062 not in the Motif Atlas

Geometric match to HL_5TBW_063

Geometric discrepancy: 0.0796

The information below is about HL_5TBW_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8PFR|1|A|U|2920
8PFR|1|A|U|2921
8PFR|1|A|G|2922
8PFR|1|A|U|2923
8PFR|1|A|U|2924
8PFR|1|A|C|2925
8PFR|1|A|A|2926

Current chains

Chain A

25S rRNA

Nearby chains

Chain LG

60S ribosomal protein L3