HL_8PFR_073

3D structure

PDB id

8PFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39L integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

8PFR|1|LD|U|125

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PFR_073 not in the Motif Atlas

Homologous match to HL_5TBW_076

Geometric discrepancy: 0.1212

The information below is about HL_5TBW_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45177.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

8PFR|1|LD|G|124
8PFR|1|LD|U|125
8PFR|1|LD|A|126
8PFR|1|LD|U|127
8PFR|1|LD|U|128
8PFR|1|LD|C|129

Current chains

Chain LD

5.8S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain QX

60S ribosomal protein L25