HL_8PHJ_005

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

G(4OC)UCAUAAC

Length

9 nucleotides

Bulged bases

8PHJ|1|8|U|34

QA status

Modified nucleotides: 4OC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PHJ_005 not in the Motif Atlas

Homologous match to HL_4TUE_034

Geometric discrepancy: 0.1234

The information below is about HL_4TUE_034

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

8PHJ|1|8|G|32
8PHJ|1|8|4OC|33
8PHJ|1|8|U|34
8PHJ|1|8|C|35
8PHJ|1|8|A|36
8PHJ|1|8|U|37
8PHJ|1|8|A|38
8PHJ|1|8|A|39
8PHJ|1|8|C|40

Current chains

Chain 8

fMet-tRNA(fMet)

Nearby chains

Chain 7

Transfer RNA; tRNA

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain G

Small ribosomal subunit protein uS7

Chain K

Small ribosomal subunit protein uS11