HL_8PHJ_018

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

8PHJ|1|A|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PHJ_018 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.2243

The information below is about HL_5J7L_012

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8PHJ|1|A|G|462
8PHJ|1|A|U|463
8PHJ|1|A|U|464
8PHJ|1|A|A|465
8PHJ|1|A|A|466
8PHJ|1|A|U|467
8PHJ|1|A|A|468
8PHJ|1|A|C|469
8PHJ|1|A|C|470

Current chains

Chain A

16S rRNA

Nearby chains