HL_8PHJ_035

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

GAUCAGAAUGC

Length

11 nucleotides

Bulged bases

8PHJ|1|A|U|1364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PHJ_035 not in the Motif Atlas

Homologous match to HL_4LFB_030

Geometric discrepancy: 0.0868

The information below is about HL_4LFB_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8PHJ|1|A|G|1356
8PHJ|1|A|A|1357
8PHJ|1|A|U|1358
8PHJ|1|A|C|1359
8PHJ|1|A|A|1360
8PHJ|1|A|G|1361
8PHJ|1|A|A|1362
8PHJ|1|A|A|1363
8PHJ|1|A|U|1364
8PHJ|1|A|G|1365
8PHJ|1|A|C|1366

Current chains

Chain A

16S rRNA

Nearby chains

Chain C

Small ribosomal subunit protein uS3

Chain I

Small ribosomal subunit protein uS9

Chain J

Small ribosomal subunit protein uS10

Chain N

Small ribosomal subunit protein uS14