HL_8PHJ_041

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

8PHJ|1|a|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PHJ_041 not in the Motif Atlas

Geometric match to HL_4AY2_001

Geometric discrepancy: 0.1142

The information below is about HL_4AY2_001

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8PHJ|1|a|U|137
8PHJ|1|a|U|138
8PHJ|1|a|U|139
8PHJ|1|a|C|140
8PHJ|1|a|G|141
8PHJ|1|a|A|142

Current chains

Chain a

23S rRNA (2862-MER)

Nearby chains

Chain s

Large ribosomal subunit protein uL23