HL_8PHJ_043

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

8PHJ|1|a|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PHJ_043 not in the Motif Atlas

Geometric match to HL_7RQB_006

Geometric discrepancy: 0.0846

The information below is about HL_7RQB_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06192.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

14

Unit IDs

8PHJ|1|a|G|194
8PHJ|1|a|A|195
8PHJ|1|a|A|196
8PHJ|1|a|A|197
8PHJ|1|a|C|198
8PHJ|1|a|A|199
8PHJ|1|a|U|200
8PHJ|1|a|C|201

Current chains

Chain a

23S rRNA (2862-MER)

Nearby chains

Chain 8

Transfer RNA; tRNA

Chain k

Large ribosomal subunit protein uL15

Chain w

Large ribosomal subunit protein bL28