HL_8PHJ_045

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PHJ_045 not in the Motif Atlas

Homologous match to HL_5J7L_141

Geometric discrepancy: 0.0771

The information below is about HL_5J7L_141

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37369.2

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

9

Unit IDs

8PHJ|1|a|C|246
8PHJ|1|a|G|247
8PHJ|1|a|G|248
8PHJ|1|a|C|249
8PHJ|1|a|G|250
8PHJ|1|a|A|251
8PHJ|1|a|G|252

Current chains

Chain a

23S rRNA (2862-MER)

Nearby chains

Chain 2

Large ribosomal subunit protein bL35

Chain 8

Transfer RNA; tRNA

Chain k

Large ribosomal subunit protein uL15