HL_8PHJ_053

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

CUUAGG

Length

6 nucleotides

Bulged bases

8PHJ|1|a|U|545

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PHJ_053 not in the Motif Atlas

Geometric match to HL_2Y8Y_001

Geometric discrepancy: 0.3417

The information below is about HL_2Y8Y_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

8PHJ|1|a|C|544
8PHJ|1|a|U|545
8PHJ|1|a|U|546
8PHJ|1|a|A|547
8PHJ|1|a|G|548
8PHJ|1|a|G|549

Current chains

Chain a

23S rRNA (2862-MER)

Nearby chains

Chain i

Large ribosomal subunit protein uL13