HL_8PHJ_054

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

UUUUGUAUAA

Length

10 nucleotides

Bulged bases

8PHJ|1|a|A|574

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PHJ_054 not in the Motif Atlas

Geometric match to HL_5J7L_150

Geometric discrepancy: 0.0639

The information below is about HL_5J7L_150

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8PHJ|1|a|U|566
8PHJ|1|a|U|567
8PHJ|1|a|U|568
8PHJ|1|a|U|569
8PHJ|1|a|G|570
8PHJ|1|a|U|571
8PHJ|1|a|A|572
8PHJ|1|a|U|573
8PHJ|1|a|A|574
8PHJ|1|a|A|575

Current chains

Chain a

23S rRNA (2862-MER)

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain k

Large ribosomal subunit protein uL15

Chain p

Large ribosomal subunit protein bL20

Chain q

Large ribosomal subunit protein bL21

Chain z

Large ribosomal subunit protein bL32