3D structure

PDB id
8PHJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
cA4-bound Cami1 in complex with 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.67 Å

Loop

Sequence
CCUCGCG
Length
7 nucleotides
Bulged bases
8PHJ|1|a|U|1729, 8PHJ|1|a|C|1732
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8PHJ_079 not in the Motif Atlas
Geometric match to HL_2ZZM_002
Geometric discrepancy: 0.2479
The information below is about HL_2ZZM_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_13963.3
Basepair signature
cWW-F-F
Number of instances in this motif group
4

Unit IDs

8PHJ|1|a|C|1727
8PHJ|1|a|C|1728
8PHJ|1|a|U|1729
8PHJ|1|a|C|1730
8PHJ|1|a|G|1731
8PHJ|1|a|C|1732
8PHJ|1|a|G|1733

Current chains

Chain a
23S rRNA (2862-MER)

Nearby chains

No other chains within 10Å

Coloring options:


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