HL_8PJ1_016

3D structure

PDB id

8PJ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex in open codon scanning state (48S-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCUCGGCGGCCCGAA

Length

15 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PJ1|1|A|U|747
8PJ1|1|A|C|748
8PJ1|1|A|U|749
8PJ1|1|A|C|750
8PJ1|1|A|G|751
8PJ1|1|A|G|752
8PJ1|1|A|C|753
8PJ1|1|A|G|788
8PJ1|1|A|G|789
8PJ1|1|A|C|790
8PJ1|1|A|C|791
8PJ1|1|A|C|792
8PJ1|1|A|G|793
8PJ1|1|A|A|794
8PJ1|1|A|A|795

Current chains

Chain A

18S rRNA

Nearby chains

Chain B

40S ribosomal protein S11

Chain C

40S ribosomal protein S4, X isoform

Chain G

40S ribosomal protein S7

Chain S

40S ribosomal protein S6