HL_8PJ1_019

3D structure

PDB id

8PJ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex in open codon scanning state (48S-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UAUUUUGUUGGUUUUCG

Length

17 nucleotides

Bulged bases

8PJ1|1|A|G|891, 8PJ1|1|A|U|896

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PJ1|1|A|U|885
8PJ1|1|A|A|886
8PJ1|1|A|U|887
8PJ1|1|A|U|888
8PJ1|1|A|U|889
8PJ1|1|A|U|890
8PJ1|1|A|G|891
8PJ1|1|A|U|892
8PJ1|1|A|U|893
8PJ1|1|A|G|894
8PJ1|1|A|G|895
8PJ1|1|A|U|896
8PJ1|1|A|U|897
8PJ1|1|A|U|898
8PJ1|1|A|U|899
8PJ1|1|A|C|900
8PJ1|1|A|G|901

Current chains

Chain A

18S rRNA

Nearby chains

Chain B

40S ribosomal protein S11

Chain S

40S ribosomal protein S6