HL_8PJ1_035

3D structure

PDB id

8PJ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex in open codon scanning state (48S-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCCGCCGGGGGCCCUGGCGGAGCG

Length

24 nucleotides

Bulged bases

8PJ1|1|A|C|1772, 8PJ1|1|A|C|1783

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PJ1|1|A|C|1751
8PJ1|1|A|C|1752
8PJ1|1|A|C|1753
8PJ1|1|A|G|1754
8PJ1|1|A|C|1755
8PJ1|1|A|C|1756
8PJ1|1|A|G|1757
8PJ1|1|A|G|1758
8PJ1|1|A|G|1759
8PJ1|1|A|G|1760
8PJ1|1|A|G|1771
8PJ1|1|A|C|1772
8PJ1|1|A|C|1773
8PJ1|1|A|C|1774
8PJ1|1|A|U|1775
8PJ1|1|A|G|1776
8PJ1|1|A|G|1777
8PJ1|1|A|C|1778
8PJ1|1|A|G|1779
8PJ1|1|A|G|1780
8PJ1|1|A|A|1781
8PJ1|1|A|G|1782
8PJ1|1|A|C|1783
8PJ1|1|A|G|1784

Current chains

Chain A

18S rRNA

Nearby chains

Chain S

40S ribosomal protein S6