HL_8PJ2_003

3D structure

PDB id

8PJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex in AUG recognition state after eIF5-induced GTP hydrolysis by eIF2 (48S-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUA(A2M)UUC

Length

7 nucleotides

Bulged bases

8PJ2|1|A|A|158, 8PJ2|1|A|U|160, 8PJ2|1|A|U|161

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PJ2_003 not in the Motif Atlas

Homologous match to HL_8C3A_194

Geometric discrepancy: 0.1689

The information below is about HL_8C3A_194

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

8PJ2|1|A|G|156
8PJ2|1|A|U|157
8PJ2|1|A|A|158
8PJ2|1|A|A2M|159
8PJ2|1|A|U|160
8PJ2|1|A|U|161
8PJ2|1|A|C|162

Current chains

Chain A

18S rRNA

Nearby chains

Chain S

40S ribosomal protein S6

Chain T

40S ribosomal protein S24