HL_8PJ2_015

3D structure

PDB id

8PJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex in AUG recognition state after eIF5-induced GTP hydrolysis by eIF2 (48S-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PJ2_015 not in the Motif Atlas

Geometric match to HL_3RG5_007

Geometric discrepancy: 0.3233

The information below is about HL_3RG5_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8PJ2|1|A|C|711
8PJ2|1|A|G|712
8PJ2|1|A|C|713
8PJ2|1|A|G|714
8PJ2|1|A|A|715
8PJ2|1|A|G|716

Current chains

Chain A

18S rRNA

Nearby chains

Chain 1

Eukaryotic translation initiation factor 3 subunit B

Chain u

Eukaryotic translation initiation factor 3 subunit A