HL_8PJ2_016
3D structure
- PDB id
- 8PJ2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex in AUG recognition state after eIF5-induced GTP hydrolysis by eIF2 (48S-2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UCUCGGCGGCCCGAA
- Length
- 15 nucleotides
- Bulged bases
- 8PJ2|1|A|C|792
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PJ2_016 not in the Motif Atlas
- Geometric match to HL_2ZNI_001
- Geometric discrepancy: 0.3513
- The information below is about HL_2ZNI_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.7
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 22
Unit IDs
8PJ2|1|A|U|747
8PJ2|1|A|C|748
8PJ2|1|A|U|749
8PJ2|1|A|C|750
8PJ2|1|A|G|751
8PJ2|1|A|G|752
8PJ2|1|A|C|753
8PJ2|1|A|G|788
8PJ2|1|A|G|789
8PJ2|1|A|C|790
8PJ2|1|A|C|791
8PJ2|1|A|C|792
8PJ2|1|A|G|793
8PJ2|1|A|A|794
8PJ2|1|A|A|795
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain B
- 40S ribosomal protein S11
- Chain C
- 40S ribosomal protein S4, X isoform
- Chain G
- 40S ribosomal protein S7
- Chain S
- 40S ribosomal protein S6
Coloring options: