HL_8PJ2_030

3D structure

PDB id

8PJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex in AUG recognition state after eIF5-induced GTP hydrolysis by eIF2 (48S-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCCCGAGCG

Length

9 nucleotides

Bulged bases

8PJ2|1|A|C|1419, 8PJ2|1|A|C|1423

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PJ2_030 not in the Motif Atlas

Homologous match to HL_8C3A_221

Geometric discrepancy: 0.5626

The information below is about HL_8C3A_221

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

8PJ2|1|A|C|1416
8PJ2|1|A|C|1417
8PJ2|1|A|C|1418
8PJ2|1|A|C|1419
8PJ2|1|A|G|1420
8PJ2|1|A|A|1421
8PJ2|1|A|G|1422
8PJ2|1|A|C|1423
8PJ2|1|A|G|1424

Current chains

Chain A

18S rRNA

Nearby chains

Chain Y

40S ribosomal protein S16

Chain d

40S ribosomal protein S19