HL_8PJ2_035

3D structure

PDB id

8PJ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex in AUG recognition state after eIF5-induced GTP hydrolysis by eIF2 (48S-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCCGCCGGGGGCCCUGGCGGAGCG

Length

24 nucleotides

Bulged bases

8PJ2|1|A|C|1753, 8PJ2|1|A|C|1783

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PJ2|1|A|C|1751
8PJ2|1|A|C|1752
8PJ2|1|A|C|1753
8PJ2|1|A|G|1754
8PJ2|1|A|C|1755
8PJ2|1|A|C|1756
8PJ2|1|A|G|1757
8PJ2|1|A|G|1758
8PJ2|1|A|G|1759
8PJ2|1|A|G|1760
8PJ2|1|A|G|1771
8PJ2|1|A|C|1772
8PJ2|1|A|C|1773
8PJ2|1|A|C|1774
8PJ2|1|A|U|1775
8PJ2|1|A|G|1776
8PJ2|1|A|G|1777
8PJ2|1|A|C|1778
8PJ2|1|A|G|1779
8PJ2|1|A|G|1780
8PJ2|1|A|A|1781
8PJ2|1|A|G|1782
8PJ2|1|A|C|1783
8PJ2|1|A|G|1784

Current chains

Chain A

18S rRNA

Nearby chains

Chain S

40S ribosomal protein S6