HL_8PJ2_037
3D structure
- PDB id
- 8PJ2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex in AUG recognition state after eIF5-induced GTP hydrolysis by eIF2 (48S-2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CAGCGGAAG
- Length
- 9 nucleotides
- Bulged bases
- 8PJ2|1|w|C|16, 8PJ2|1|w|G|19
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PJ2_037 not in the Motif Atlas
- Homologous match to HL_7EQJ_004
- Geometric discrepancy: 0.1224
- The information below is about HL_7EQJ_004
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
8PJ2|1|w|C|13
8PJ2|1|w|A|14
8PJ2|1|w|G|15
8PJ2|1|w|C|16
8PJ2|1|w|G|18
8PJ2|1|w|G|19
8PJ2|1|w|A|20
8PJ2|1|w|A|21
8PJ2|1|w|G|22
Current chains
- Chain w
- Initiator Met-tRNA-i
Nearby chains
- Chain e
- 40S ribosomal protein S25
- Chain r
- Eukaryotic translation initiation factor 2 subunit 1
- Chain z
- Eukaryotic translation initiation factor 5
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