HL_8PJ3_013

3D structure

PDB id

8PJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex upon transfer of initiator tRNA to eIF5B (48S-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PJ3_013 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.1712

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8PJ3|1|A|A|569
8PJ3|1|A|C|570
8PJ3|1|A|U|571
8PJ3|1|A|U|572
8PJ3|1|A|U|573
8PJ3|1|A|A|574
8PJ3|1|A|A|575
8PJ3|1|A|A|576
8PJ3|1|A|U|577
8PJ3|1|A|C|578
8PJ3|1|A|C|579
8PJ3|1|A|U|580
8PJ3|1|A|U|581

Current chains

Chain A

18S rRNA

Nearby chains

Chain D

40S ribosomal protein S9

Chain T

40S ribosomal protein S24