HL_8PJ3_025

3D structure

PDB id

8PJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex upon transfer of initiator tRNA to eIF5B (48S-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGCAAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PJ3_025 not in the Motif Atlas

Homologous match to HL_8C3A_216

Geometric discrepancy: 0.0826

The information below is about HL_8C3A_216

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

302

Unit IDs

8PJ3|1|A|U|1178
8PJ3|1|A|G|1179
8PJ3|1|A|C|1180
8PJ3|1|A|A|1181
8PJ3|1|A|A|1182
8PJ3|1|A|A|1183

Current chains

Chain A

18S rRNA

Nearby chains

Chain 9

60S ribosomal protein L41

Chain y

Eukaryotic translation initiation factor 3 subunit C