HL_8PJ3_030

3D structure

PDB id

8PJ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex upon transfer of initiator tRNA to eIF5B (48S-3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCCCGAGCG

Length

9 nucleotides

Bulged bases

8PJ3|1|A|C|1419, 8PJ3|1|A|C|1423

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PJ3_030 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3731

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

8PJ3|1|A|C|1416
8PJ3|1|A|C|1417
8PJ3|1|A|C|1418
8PJ3|1|A|C|1419
8PJ3|1|A|G|1420
8PJ3|1|A|A|1421
8PJ3|1|A|G|1422
8PJ3|1|A|C|1423
8PJ3|1|A|G|1424

Current chains

Chain A

18S rRNA

Nearby chains

Chain Y

40S ribosomal protein S16

Chain d

40S ribosomal protein S19