HL_8PJ3_040
3D structure
- PDB id
- 8PJ3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex upon transfer of initiator tRNA to eIF5B (48S-3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UAUUCCCAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PJ3_040 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.3895
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13963.3
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
8PJ3|1|A|U|1112
8PJ3|1|A|A|1113
8PJ3|1|A|U|1114
8PJ3|1|A|U|1115
8PJ3|1|A|C|1116
8PJ3|1|A|C|1117
8PJ3|1|A|C|1118
8PJ3|1|A|A|1119
8PJ3|1|A|U|1120
8PJ3|1|A|G|1121
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain H
- 40S ribosomal protein S27
- Chain O
- 40S ribosomal protein S3a
- Chain u
- Eukaryotic translation initiation factor 3 subunit A
- Chain x
- Eukaryotic translation initiation factor 3 subunit D
- Chain y
- Eukaryotic translation initiation factor 3 subunit C
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