HL_8PJ4_007
3D structure
- PDB id
- 8PJ4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex after eIF5 release (48S-4)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUCGCCGUGCC
- Length
- 11 nucleotides
- Bulged bases
- 8PJ4|1|A|G|385
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PJ4_007 not in the Motif Atlas
- Geometric match to HL_5AXM_001
- Geometric discrepancy: 0.364
- The information below is about HL_5AXM_001
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20490.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 13
Unit IDs
8PJ4|1|A|G|377
8PJ4|1|A|U|378
8PJ4|1|A|C|379
8PJ4|1|A|G|380
8PJ4|1|A|C|381
8PJ4|1|A|C|382
8PJ4|1|A|G|383
8PJ4|1|A|U|384
8PJ4|1|A|G|385
8PJ4|1|A|C|386
8PJ4|1|A|C|387
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain B
- 40S ribosomal protein S11
- Chain R
- 40S ribosomal protein S8
Coloring options: