HL_8PJ4_039

3D structure

PDB id

8PJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex after eIF5 release (48S-4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAUCGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PJ4_039 not in the Motif Atlas

Homologous match to HL_4V8N_145

Geometric discrepancy: 0.3665

The information below is about HL_4V8N_145

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8PJ4|1|w|G|53
8PJ4|1|w|A|54
8PJ4|1|w|U|55
8PJ4|1|w|C|56
8PJ4|1|w|G|57
8PJ4|1|w|A|58
8PJ4|1|w|A|59
8PJ4|1|w|A|60
8PJ4|1|w|C|61

Current chains

Chain w

Initiator Met-tRNA-i

Nearby chains

Chain r

Eukaryotic translation initiation factor 2 subunit 1