HL_8PJ5_011

3D structure

PDB id

8PJ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex after eIF2 release prior 60S subunit joining (48S-5)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGACCCG

Length

7 nucleotides

Bulged bases

8PJ5|1|A|A|500, 8PJ5|1|A|C|502, 8PJ5|1|A|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PJ5_011 not in the Motif Atlas

Homologous match to HL_8C3A_203

Geometric discrepancy: 0.1379

The information below is about HL_8C3A_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.3

Basepair signature

cWW-F-F

Number of instances in this motif group

23

Unit IDs

8PJ5|1|A|C|498
8PJ5|1|A|G|499
8PJ5|1|A|A|500
8PJ5|1|A|C|501
8PJ5|1|A|C|502
8PJ5|1|A|C|503
8PJ5|1|A|G|504

Current chains

Chain A

18S rRNA

Nearby chains

Chain C

40S ribosomal protein S4, X isoform

Chain T

40S ribosomal protein S24