HL_8PJ5_016
3D structure
- PDB id
- 8PJ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex after eIF2 release prior 60S subunit joining (48S-5)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UCUCGGCGGCCCGAA
- Length
- 15 nucleotides
- Bulged bases
- 8PJ5|1|A|C|792
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PJ5_016 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.3526
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_33487.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8PJ5|1|A|U|747
8PJ5|1|A|C|748
8PJ5|1|A|U|749
8PJ5|1|A|C|750
8PJ5|1|A|G|751
8PJ5|1|A|G|752
8PJ5|1|A|C|753
8PJ5|1|A|G|788
8PJ5|1|A|G|789
8PJ5|1|A|C|790
8PJ5|1|A|C|791
8PJ5|1|A|C|792
8PJ5|1|A|G|793
8PJ5|1|A|A|794
8PJ5|1|A|A|795
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain B
- 40S ribosomal protein S11
- Chain C
- 40S ribosomal protein S4, X isoform
- Chain G
- 40S ribosomal protein S7
- Chain S
- 40S ribosomal protein S6
Coloring options: