HL_8PJ5_037

3D structure

PDB id

8PJ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex after eIF2 release prior 60S subunit joining (48S-5)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAGCGGAAG

Length

9 nucleotides

Bulged bases

8PJ5|1|w|C|16, 8PJ5|1|w|G|18, 8PJ5|1|w|G|19, 8PJ5|1|w|A|20

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PJ5_037 not in the Motif Atlas

Homologous match to HL_3KFU_004

Geometric discrepancy: 0.1327

The information below is about HL_3KFU_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PJ5|1|w|C|13
8PJ5|1|w|A|14
8PJ5|1|w|G|15
8PJ5|1|w|C|16
8PJ5|1|w|G|18
8PJ5|1|w|G|19
8PJ5|1|w|A|20
8PJ5|1|w|A|21
8PJ5|1|w|G|22

Current chains

Chain w

Initiator Met-tRNA-i

Nearby chains