HL_8PJ6_039

3D structure

PDB id

8PJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex with initiator tRNA, eIF1A and eIF3 (off-pathway)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAUCGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PJ6_039 not in the Motif Atlas

Homologous match to HL_5AXM_003

Geometric discrepancy: 0.271

The information below is about HL_5AXM_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.3

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

8PJ6|1|w|G|53
8PJ6|1|w|A|54
8PJ6|1|w|U|55
8PJ6|1|w|C|56
8PJ6|1|w|G|57
8PJ6|1|w|A|58
8PJ6|1|w|A|59
8PJ6|1|w|A|60
8PJ6|1|w|C|61

Current chains

Chain w

Initiator Met-tRNA-i

Nearby chains