HL_8PJ6_041
3D structure
- PDB id
- 8PJ6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex with initiator tRNA, eIF1A and eIF3 (off-pathway)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UAUUCCCAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PJ6_041 not in the Motif Atlas
- Geometric match to HL_1KH6_003
- Geometric discrepancy: 0.3821
- The information below is about HL_1KH6_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_33487.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8PJ6|1|A|U|1112
8PJ6|1|A|A|1113
8PJ6|1|A|U|1114
8PJ6|1|A|U|1115
8PJ6|1|A|C|1116
8PJ6|1|A|C|1117
8PJ6|1|A|C|1118
8PJ6|1|A|A|1119
8PJ6|1|A|U|1120
8PJ6|1|A|G|1121
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain H
- 40S ribosomal protein S27
- Chain O
- 40S ribosomal protein S3a
- Chain u
- Eukaryotic translation initiation factor 3 subunit A
- Chain x
- Eukaryotic translation initiation factor 3 subunit D
- Chain y
- Eukaryotic translation initiation factor 3 subunit C
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