HL_8PK0_007

3D structure

PDB id

8PK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human mitoribosomal large subunit assembly intermediate 1 with GTPBP10-GTPBP7

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

UAAAAGA

Length

7 nucleotides

Bulged bases

8PK0|1|A|A|1937, 8PK0|1|A|G|1939

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PK0_007 not in the Motif Atlas

Geometric match to HL_5M3H_001

Geometric discrepancy: 0.2267

The information below is about HL_5M3H_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

8PK0|1|A|U|1934
8PK0|1|A|A|1935
8PK0|1|A|A|1936
8PK0|1|A|A|1937
8PK0|1|A|A|1938
8PK0|1|A|G|1939
8PK0|1|A|A|1940

Current chains

Chain A

16S rRNA + pre-H68-71 segment

Nearby chains

Chain 5

39S ribosomal protein L37, mitochondrial

Chain D

39S ribosomal protein L2, mitochondrial