HL_8PK0_013
3D structure
- PDB id
- 8PK0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human mitoribosomal large subunit assembly intermediate 1 with GTPBP10-GTPBP7
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.03 Å
Loop
- Sequence
- GAAAAAAC
- Length
- 8 nucleotides
- Bulged bases
- 8PK0|1|A|A|2134, 8PK0|1|A|A|2135
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PK0_013 not in the Motif Atlas
- Homologous match to HL_4WF9_028
- Geometric discrepancy: 0.307
- The information below is about HL_4WF9_028
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47171.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
8PK0|1|A|G|2129
8PK0|1|A|A|2130
8PK0|1|A|A|2131
8PK0|1|A|A|2132
8PK0|1|A|A|2133
8PK0|1|A|A|2134
8PK0|1|A|A|2135
8PK0|1|A|C|2136
Current chains
- Chain A
- 16S rRNA + pre-H68-71 segment
Nearby chains
- Chain I
- 39S ribosomal protein L10, mitochondrial
- Chain N
- 39S ribosomal protein L16, mitochondrial
- Chain R
- 39S ribosomal protein L20, mitochondrial
- Chain Z
- 39S ribosomal protein L30, mitochondrial
- Chain o
- Ribosomal protein 63, mitochondrial
- Chain r
- 39S ribosomal protein S18a, mitochondrial
Coloring options: