HL_8PK0_022

3D structure

PDB id

8PK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human mitoribosomal large subunit assembly intermediate 1 with GTPBP10-GTPBP7

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

AGCAUCACCAGUAUU

Length

15 nucleotides

Bulged bases

8PK0|1|A|A|2521, 8PK0|1|A|C|2523, 8PK0|1|A|U|2531

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8PK0|1|A|A|2518
8PK0|1|A|G|2519
8PK0|1|A|C|2520
8PK0|1|A|A|2521
8PK0|1|A|U|2522
8PK0|1|A|C|2523
8PK0|1|A|A|2524
8PK0|1|A|C|2525
8PK0|1|A|C|2526
8PK0|1|A|A|2527
8PK0|1|A|G|2528
8PK0|1|A|U|2529
8PK0|1|A|A|2530
8PK0|1|A|U|2531
8PK0|1|A|U|2532

Current chains

Chain A

16S rRNA + pre-H68-71 segment

Nearby chains

Chain 5

39S ribosomal protein L37, mitochondrial

Chain D

39S ribosomal protein L2, mitochondrial

Chain y

Transcription termination factor 4, mitochondrial