HL_8PK0_033

3D structure

PDB id

8PK0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human mitoribosomal large subunit assembly intermediate 1 with GTPBP10-GTPBP7

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PK0_033 not in the Motif Atlas

Geometric match to HL_3LQX_001

Geometric discrepancy: 0.1356

The information below is about HL_3LQX_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

8PK0|1|A|C|3157
8PK0|1|A|G|3158
8PK0|1|A|A|3159
8PK0|1|A|A|3160
8PK0|1|A|A|3161
8PK0|1|A|G|3162

Current chains

Chain A

16S rRNA + pre-H68-71 segment

Nearby chains

Chain t

GTP-binding protein 10

Chain u

Mitochondrial assembly of ribosomal large subunit protein 1