HL_8PK0_042
3D structure
- PDB id
- 8PK0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human mitoribosomal large subunit assembly intermediate 1 with GTPBP10-GTPBP7
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.03 Å
Loop
- Sequence
- GAGCAGAACCCAACCUC
- Length
- 17 nucleotides
- Bulged bases
- 8PK0|1|A|G|2862, 8PK0|1|A|A|2863
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PK0_042 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.3946
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_33487.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8PK0|1|A|G|2857
8PK0|1|A|A|2858
8PK0|1|A|G|2859
8PK0|1|A|C|2860
8PK0|1|A|A|2861
8PK0|1|A|G|2862
8PK0|1|A|A|2863
8PK0|1|A|A|2864
8PK0|1|A|C|2865
8PK0|1|A|C|2866
8PK0|1|A|C|2867
8PK0|1|A|A|2868
8PK0|1|A|A|2869
8PK0|1|A|C|2870
8PK0|1|A|C|2871
8PK0|1|A|U|2872
8PK0|1|A|C|2873
Current chains
- Chain A
- 16S rRNA + pre-H68-71 segment
Nearby chains
- Chain 6
- 39S ribosomal protein L38, mitochondrial
- Chain N
- 39S ribosomal protein L16, mitochondrial
- Chain W
- 39S ribosomal protein L27, mitochondrial
- Chain Z
- 39S ribosomal protein L30, mitochondrial
- Chain f
- 39S ribosomal protein L48, mitochondrial
Coloring options: