HL_8PNN_006

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAUAG

Length

5 nucleotides

Bulged bases

8PNN|1|1|U|210, 8PNN|1|1|A|211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PNN_006 not in the Motif Atlas

Geometric match to HL_8CRE_006

Geometric discrepancy: 0.0583

The information below is about HL_8CRE_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

8PNN|1|1|C|208
8PNN|1|1|A|209
8PNN|1|1|U|210
8PNN|1|1|A|211
8PNN|1|1|G|212

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 9

60S ribosomal protein L26-A

Chain l

60S ribosomal protein L4-A