3D structure

PDB id
8PNN (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S yeast ribosome in complex with Bromolissoclimide
Experimental method
X-RAY DIFFRACTION
Resolution
2.9 Å

Loop

Sequence
UGAAAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8PNN_016 not in the Motif Atlas
Homologous match to HL_8P9A_128
Geometric discrepancy: 0.0797
The information below is about HL_8P9A_128
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

8PNN|1|1|U|707
8PNN|1|1|G|708
8PNN|1|1|A|709
8PNN|1|1|A|710
8PNN|1|1|A|711
8PNN|1|1|G|712

Current chains

Chain 1
25S ribosomal RNA

Nearby chains

Chain AB
60S ribosomal protein L28
Chain AJ
60S ribosomal protein L36-A
Chain t
60S ribosomal protein L13-A
Chain y
60S ribosomal protein L18-A

Coloring options:


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