HL_8PNN_017

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PNN_017 not in the Motif Atlas

Homologous match to HL_8P9A_129

Geometric discrepancy: 0.1375

The information below is about HL_8P9A_129

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

8PNN|1|1|C|732
8PNN|1|1|G|733
8PNN|1|1|C|734
8PNN|1|1|A|735
8PNN|1|1|A|736
8PNN|1|1|G|737

Current chains

Chain 1

25S ribosomal RNA

Nearby chains