HL_8PNN_040

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGAACAG

Length

7 nucleotides

Bulged bases

8PNN|1|1|C|1866

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PNN_040 not in the Motif Atlas

Homologous match to HL_8P9A_153

Geometric discrepancy: 0.1189

The information below is about HL_8P9A_153

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

8PNN|1|1|U|1862
8PNN|1|1|G|1863
8PNN|1|1|A|1864
8PNN|1|1|A|1865
8PNN|1|1|C|1866
8PNN|1|1|A|1867
8PNN|1|1|G|1868

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain z

60S ribosomal protein L19-A