HL_8PNN_048

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8PNN|1|1|A|2372, 8PNN|1|1|A|2373, 8PNN|1|1|C|2374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PNN_048 not in the Motif Atlas

Homologous match to HL_8P9A_162

Geometric discrepancy: 0.0523

The information below is about HL_8P9A_162

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8PNN|1|1|G|2369
8PNN|1|1|G|2370
8PNN|1|1|G|2371
8PNN|1|1|A|2372
8PNN|1|1|A|2373
8PNN|1|1|C|2374
8PNN|1|1|G|2375
8PNN|1|1|G|2376
8PNN|1|1|G|2377
8PNN|1|1|C|2378

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AF

60S ribosomal protein L32

Chain k

60S ribosomal protein L3