HL_8PNN_062

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PNN_062 not in the Motif Atlas

Homologous match to HL_8P9A_176

Geometric discrepancy: 0.1205

The information below is about HL_8P9A_176

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

8PNN|1|1|C|3025
8PNN|1|1|G|3026
8PNN|1|1|A|3027
8PNN|1|1|G|3028
8PNN|1|1|A|3029
8PNN|1|1|G|3030

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain AN

Ubiquitin-60S ribosomal protein L40

Chain q

60S ribosomal protein L9-A