HL_8PNN_096

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PNN_096 not in the Motif Atlas

Homologous match to HL_8P9A_213

Geometric discrepancy: 0.0834

The information below is about HL_8P9A_213

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8PNN|1|A|A|1084
8PNN|1|A|G|1085
8PNN|1|A|A|1086
8PNN|1|A|A|1087
8PNN|1|A|A|1088
8PNN|1|A|U|1089

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

40S ribosomal protein S2

Chain b

Small ribosomal subunit protein eS26B