HL_8PNN_099
3D structure
- PDB id
- 8PNN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Bromolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- AUUGAGAGCU
- Length
- 10 nucleotides
- Bulged bases
- 8PNN|1|A|G|1243, 8PNN|1|A|G|1245
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PNN_099 not in the Motif Atlas
- Homologous match to HL_8P9A_216
- Geometric discrepancy: 0.1837
- The information below is about HL_8P9A_216
- Detailed Annotation
- GNRA wlth extra near cWW
- Broad Annotation
- GNRA wlth extra near cWW
- Motif group
- HL_45359.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
8PNN|1|A|A|1238
8PNN|1|A|U|1239
8PNN|1|A|U|1240
8PNN|1|A|G|1241
8PNN|1|A|A|1242
8PNN|1|A|G|1243
8PNN|1|A|A|1244
8PNN|1|A|G|1245
8PNN|1|A|C|1246
8PNN|1|A|U|1247
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain Q
- 40S ribosomal protein S15
- Chain e
- Small ribosomal subunit protein uS14A
- Chain g
- Ubiquitin
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