HL_8PNN_101

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

8PNN|1|A|U|1314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PNN_101 not in the Motif Atlas

Homologous match to HL_8CRE_219

Geometric discrepancy: 0.1496

The information below is about HL_8CRE_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8PNN|1|A|C|1309
8PNN|1|A|U|1310
8PNN|1|A|U|1311
8PNN|1|A|A|1312
8PNN|1|A|A|1313
8PNN|1|A|U|1314
8PNN|1|A|U|1315
8PNN|1|A|G|1316

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S17-A