HL_8PNN_102

3D structure

PDB id

8PNN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Bromolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAUUUG

Length

6 nucleotides

Bulged bases

8PNN|1|A|U|1362, 8PNN|1|A|U|1363

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PNN_102 not in the Motif Atlas

Homologous match to HL_8P9A_219

Geometric discrepancy: 0.4564

The information below is about HL_8P9A_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38901.2

Basepair signature

cWW-F-cSH

Number of instances in this motif group

7

Unit IDs

8PNN|1|A|C|1359
8PNN|1|A|A|1360
8PNN|1|A|U|1361
8PNN|1|A|U|1362
8PNN|1|A|U|1363
8PNN|1|A|G|1364

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S5

Chain R

40S ribosomal protein S16-A

Chain U

40S ribosomal protein S19-A